Chloroplast Motifs - Perfect (TAAA) Repeats
S.No | Sequence ID | SSR | SSR Type | Tract Length | Start | End | Sequence Name |
---|---|---|---|---|---|---|---|
1 | NC_021650 | (TAAA)3 | p4 | 12 | 24362 | 24373 | Glycine syndetika voucher CSIRO:G1300 chloroplast |
2 | NC_021649 | (TAAA)3 | p4 | 12 | 24362 | 24373 | Glycine falcata voucher CSIRO:G1718 chloroplast |
3 | NC_021648 | (TAAA)3 | p4 | 12 | 24365 | 24376 | Glycine dolichocarpa voucher CSIRO:G1134 chloroplast |
4 | NC_021647 | (TAAA)3 | p4 | 12 | 24364 | 24375 | Glycine canescens voucher CSIRO:G1232 chloroplast |
5 | NC_021646 | (TAAA)3 | p4 | 12 | 24315 | 24326 | Glycine stenophita voucher CSIRO:G1974 chloroplast |
6 | NC_021637 | (TAAA)3 | p4 | 12 | 21267 | 21278 | Phaeocystis globosa strain Pg-G(A) chloroplast |
7 | NC_021636 | (TAAA)3 | p4 | 12 | 24353 | 24364 | Glycine tomentella voucher CSIRO:G1403 chloroplast |
8 | NC_021189 | (TAAA)3 | p4 | 12 | 6524 | 6535 | Pyropia haitanensis voucher PH-38 chloroplast |
9 | NC_021189 | (TAAA)3 | p4 | 12 | 116089 | 116100 | Pyropia haitanensis voucher PH-38 chloroplast |
10 | NC_020438 | (TAAA)3 | p4 | 12 | 149830 | 149841 | Gonium pectorale chloroplast |
11 | NC_020438 | (TAAA)3 | p4 | 12 | 212687 | 212698 | Gonium pectorale chloroplast |
12 | NC_020431 | (TAAA)3 | p4 | 12 | 47802 | 47813 | Salvia miltiorrhiza chloroplast |
13 | NC_020318 | (TAAA)3 | p4 | 12 | 46627 | 46638 | Magnolia grandiflora voucher NJ016 chloroplast |
14 | NC_020317 | (TAAA)3 | p4 | 12 | 46985 | 46996 | Magnolia officinalis subsp. biloba voucher SC001 chloroplast |
15 | NC_020316 | (TAAA)3 | p4 | 12 | 46989 | 47000 | Magnolia officinalis chloroplast |
16 | NC_020152 | (TAAA)4 | p4 | 16 | 237 | 252 | Quercus rubra plastid |
17 | NC_020018 | (TAAA)3 | p4 | 12 | 48259 | 48270 | Monomorphina aenigmatica strain UTEX1284 chloroplast |
18 | NC_020018 | (TAAA)4 | p4 | 16 | 53838 | 53853 | Monomorphina aenigmatica strain UTEX1284 chloroplast |
19 | NC_018565 | (TAAA)3 | p4 | 12 | 46285 | 46296 | Pachycladon enysii chloroplast |
20 | NC_018051 | (TAAA)3 | p4 | 12 | 28613 | 28624 | Vigna unguiculata chloroplast |
21 | NC_017835 | (TAAA)4 | p4 | 16 | 4153 | 4168 | Oryza rufipogon chloroplast |
22 | NC_016927 | (TAAA)4 | p4 | 16 | 4153 | 4168 | Oryza meridionalis chloroplast |
23 | NC_016735 | (TAAA)3 | p4 | 12 | 50425 | 50436 | Fucus vesiculosus chloroplast |
24 | NC_016735 | (TAAA)3 | p4 | 12 | 112436 | 112447 | Fucus vesiculosus chloroplast |
25 | NC_016734 | (TAAA)3 | p4 | 12 | 45525 | 45536 | Brassica napus chloroplast |
26 | NC_016733 | (TAAA)3 | p4 | 12 | 22548 | 22559 | Pedinomonas minor chloroplast |
27 | NC_016727 | (TAAA)3 | p4 | 12 | 73505 | 73516 | Silene vulgaris chloroplast |
28 | NC_016068 | (TAAA)3 | p4 | 12 | 436 | 447 | Nicotiana undulata chloroplast |
29 | NC_015983 | (TAAA)3 | p4 | 12 | 71099 | 71110 | Cucumis melo subsp. melo chloroplast |
30 | NC_015892 | (TAAA)3 | p4 | 12 | 46815 | 46826 | Magnolia kwangsiensis chloroplast |
31 | NC_015623 | (TAAA)3 | p4 | 12 | 9314 | 9325 | Olea europaea subsp. maroccana chloroplast |
32 | NC_015608 | (TAAA)3 | p4 | 12 | 9317 | 9328 | Olea woodiana subsp. woodiana chloroplast |
33 | NC_015204 | (TAAA)3 | p4 | 12 | 119081 | 119092 | Gossypium thurberi chloroplast |
34 | NC_015139 | (TAAA)3 | p4 | 12 | 45583 | 45594 | Brassica rapa subsp. pekinensis chloroplast |
35 | NC_015113 | (TAAA)3 | p4 | 12 | 155 | 166 | Anthriscus cerefolium chloroplast |
36 | NC_015113 | (TAAA)3 | p4 | 12 | 68071 | 68082 | Anthriscus cerefolium chloroplast |
37 | NC_014675 | (TAAA)3 | p4 | 12 | 20055 | 20066 | Isoetes flaccida chloroplast |
38 | NC_014674 | (TAAA)4 | p4 | 16 | 219 | 234 | Castanea mollissima chloroplast |
39 | NC_013843 | (TAAA)3 | p4 | 12 | 28637 | 28648 | Vigna radiata chloroplast |
40 | NC_013843 | (TAAA)3 | p4 | 12 | 28637 | 28648 | Vigna radiata chloroplast |
41 | NC_013359 | (TAAA)3 | p4 | 12 | 88577 | 88588 | Bryopsis hypnoides chloroplast |
42 | NC_012978 | (TAAA)3 | p4 | 12 | 19108 | 19119 | Parachlorella kessleri chloroplast |
43 | NC_012615 | (TAAA)3 | p4 | 12 | 76388 | 76399 | Megaleranthis saniculifolia chloroplast |
44 | NC_012224 | (TAAA)3 | p4 | 12 | 69430 | 69441 | Jatropha curcas chloroplast |
45 | NC_012052 | (TAAA)3 | p4 | 12 | 49197 | 49208 | Syntrichia ruralis chloroplast |
46 | NC_011163 | (TAAA)4 | p4 | 16 | 52199 | 52214 | Cicer arietinum chloroplast |
47 | NC_011163 | (TAAA)4 | p4 | 16 | 13084 | 13099 | Cicer arietinum chloroplast |
48 | NC_011087 | (TAAA)3 | p4 | 12 | 880681 | 880692 | Paulinella chromatophora chromatophore |
49 | NC_011031 | (TAAA)3 | p4 | 12 | 138488 | 138499 | Oedogonium cardiacum chloroplast |
50 | NC_011031 | (TAAA)3 | p4 | 12 | 102961 | 102972 | Oedogonium cardiacum chloroplast |
51 | NC_010548 | (TAAA)3 | p4 | 12 | 63714 | 63725 | Cryptomeria japonica chloroplast |
52 | NC_010433 | (TAAA)3 | p4 | 12 | 15080 | 15091 | Manihot esculenta chloroplast |
53 | NC_010323 | (TAAA)3 | p4 | 12 | 115164 | 115175 | Carica papaya chloroplast |
54 | NC_010109 | (TAAA)3 | p4 | 12 | 29306 | 29317 | Lemna minor chloroplast |
55 | NC_009963 | (TAAA)3 | p4 | 12 | 57113 | 57124 | Cuscuta exaltata chloroplast |
56 | NC_009963 | (TAAA)3 | p4 | 12 | 40380 | 40391 | Cuscuta exaltata chloroplast |
57 | NC_009949 | (TAAA)3 | p4 | 12 | 43921 | 43932 | Cuscuta obtusiflora chloroplast |
58 | NC_009808 | (TAAA)3 | p4 | 12 | 79043 | 79054 | Ipomoea purpurea chloroplast |
59 | NC_009766 | (TAAA)3 | p4 | 12 | 55008 | 55019 | Cuscuta reflexa chloroplast |
60 | NC_009766 | (TAAA)3 | p4 | 12 | 19044 | 19055 | Cuscuta reflexa chloroplast |
61 | NC_009681 | (TAAA)3 | p4 | 12 | 26309 | 26320 | Leptosira terrestris chloroplast |
62 | NC_009600 | (TAAA)3 | p4 | 12 | 144252 | 144263 | Illicium oligandrum chloroplast |
63 | NC_009599 | (TAAA)3 | p4 | 12 | 4636 | 4647 | Buxus microphylla chloroplast |
64 | NC_009270 | (TAAA)4 | p4 | 16 | 62740 | 62755 | Capsella bursa-pastoris chloroplast |
65 | NC_009270 | (TAAA)3 | p4 | 12 | 45719 | 45730 | Capsella bursa-pastoris chloroplast |
66 | NC_009269 | (TAAA)3 | p4 | 12 | 46159 | 46170 | Barbarea verna chloroplast |
67 | NC_008829 | (TAAA)3 | p4 | 12 | 22271 | 22282 | Angiopteris evecta chloroplast |
68 | NC_008822 | (TAAA)3 | p4 | 12 | 135461 | 135472 | Chlorokybus atmophyticus chloroplast |
69 | NC_008641 | (TAAA)3 | p4 | 12 | 119175 | 119186 | Gossypium barbadense chloroplast |
70 | NC_008334 | (TAAA)3 | p4 | 12 | 45792 | 45803 | Citrus sinensis chloroplast |
71 | NC_008325 | (TAAA)3 | p4 | 12 | 160 | 171 | Daucus carota chloroplast |
72 | NC_008155 | (TAAA)4 | p4 | 16 | 4152 | 4167 | Oryza sativa Indica Group chloroplast |
73 | NC_008114 | (TAAA)3 | p4 | 12 | 167141 | 167152 | Pseudendoclonium akinetum chloroplast |
74 | NC_007932 | (TAAA)3 | p4 | 12 | 115073 | 115084 | Porphyra yezoensis chloroplast |
75 | NC_007758 | (TAAA)3 | p4 | 12 | 2436 | 2447 | Theileria parva strain Muguga apicoplast |
76 | NC_007602 | (TAAA)3 | p4 | 12 | 396 | 407 | Nicotiana tomentosiformis chloroplast |
77 | NC_007500 | (TAAA)3 | p4 | 12 | 426 | 437 | Nicotiana sylvestris chloroplast |
78 | NC_006861 | (TAAA)3 | p4 | 12 | 74798 | 74809 | Huperzia lucidula chloroplast |
79 | NC_006861 | (TAAA)3 | p4 | 12 | 5204 | 5215 | Huperzia lucidula chloroplast |
80 | NC_005973 | (TAAA)4 | p4 | 16 | 4151 | 4166 | Oryza nivara chloroplast |
81 | NC_005087 | (TAAA)3 | p4 | 12 | 48443 | 48454 | Physcomitrella patens subsp. patens chloroplast |
82 | NC_005087 | (TAAA)3 | p4 | 12 | 8941 | 8952 | Physcomitrella patens subsp. patens chloroplast |
83 | NC_004115 | (TAAA)3 | p4 | 12 | 57466 | 57477 | Chaetosphaeridium globosum chloroplast |
84 | NC_001879 | (TAAA)3 | p4 | 12 | 426 | 437 | Nicotiana tabacum plastid |
85 | NC_001840 | (TAAA)3 | p4 | 12 | 43647 | 43658 | Cyanidium caldarium chloroplast |
86 | NC_001840 | (TAAA)3 | p4 | 12 | 33890 | 33901 | Cyanidium caldarium chloroplast |
87 | NC_001675 | (TAAA)3 | p4 | 12 | 94708 | 94719 | Cyanophora paradoxa cyanelle |
88 | NC_001675 | (TAAA)3 | p4 | 12 | 58256 | 58267 | Cyanophora paradoxa cyanelle |
89 | NC_001603 | (TAAA)3 | p4 | 12 | 114705 | 114716 | Euglena gracilis chloroplast |
90 | NC_001320 | (TAAA)4 | p4 | 16 | 4152 | 4167 | Oryza sativa Japonica Group plastid |
91 | NC_001319 | (TAAA)3 | p4 | 12 | 70571 | 70582 | Marchantia polymorpha chloroplast |
92 | NC_000932 | (TAAA)3 | p4 | 12 | 46444 | 46455 | Arabidopsis thaliana chloroplast |
93 | NC_000925 | (TAAA)3 | p4 | 12 | 114326 | 114337 | Porphyra purpurea chloroplast |
94 | NC_000925 | (TAAA)3 | p4 | 12 | 85230 | 85241 | Porphyra purpurea chloroplast |