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ChloroMitoSSRDB 2.00 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

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Chloroplast Motifs - Perfect (C) Repeats

S.NoSequence IDSSRSSR TypeTract LengthStartEndSequence Name
1NC_022136(C)10p1108339783406Lygodium japonicum chloroplast
2NC_022135(C)10p1101884218851Aegilops speltoides isolate SPE0661 chloroplast
3NC_022135(C)10p1105348353492Aegilops speltoides isolate SPE0661 chloroplast
4NC_022133(C)10p1101887718886Aegilops tauschii chloroplast
5NC_022133(C)10p1105329553304Aegilops tauschii chloroplast
6NC_021936(C)10p110101025101034Najas flexilis chloroplast
7NC_021648(C)12p11296349645Glycine dolichocarpa voucher CSIRO:G1134 chloroplast
8NC_021648(C)11p1113138431394Glycine dolichocarpa voucher CSIRO:G1134 chloroplast
9NC_021636(C)11p11196579667Glycine tomentella voucher CSIRO:G1403 chloroplast
10NC_021455(C)10p110125003125012Prinsepia utilis plastid
11NC_021449(C)10p11052945303Utricularia gibba chloroplast
12NC_021439(C)10p11070477056Pinus massoniana chloroplast
13NC_021437(C)11p1118637886388Cunninghamia lanceolata chloroplast
14NC_021426(C)10p1105599956008Trochodendron aralioides chloroplast
15NC_021109(C)32p132187753187784Pleodorina starrii plastid
16NC_021109(C)13p113191077191089Pleodorina starrii plastid
17NC_021102(C)11p1116634766357Pachycladon cheesemanii chloroplast
18NC_021101(C)10p1104089740906Francoa sonchifolia plastid
19NC_020607(C)14p11454305443Artemisia frigida chloroplast
20NC_020438(C)10p1109667596684Gonium pectorale chloroplast
21NC_020438(C)14p114201564201577Gonium pectorale chloroplast
22NC_020366(C)13p11350295041Bismarckia nobilis plastid
23NC_020365(C)10p1107027570284Calamus caryotoides plastid
24NC_020364(C)12p11247894800Pseudophoenix vinifera plastid
25NC_020363(C)13p1133795937971Zingiber spectabile plastid
26NC_020362(C)10p11079407949Heliconia collinsiana plastid
27NC_020361(C)10p1106562365632Podocarpus totara chloroplast
28NC_020361(C)10p1107212272131Podocarpus totara chloroplast
29NC_020361(C)11p111102116102126Podocarpus totara chloroplast
30NC_020320(C)11p11154135423Chrysanthemum indicum voucher HeN001 chloroplast
31NC_020319(C)10p1103551935528Cycas revoluta chloroplast
32NC_020319(C)10p1104350743516Cycas revoluta chloroplast
33NC_020316(C)10p1107129971308Magnolia officinalis chloroplast
34NC_020316(C)11p111118685118695Magnolia officinalis chloroplast
35NC_020098(C)12p11252225233Tectona grandis chloroplast
36NC_020098(C)11p111127255127265Tectona grandis chloroplast
37NC_020092(C)11p11154315441Chrysanthemum x morifolium chloroplast
38NC_019650(C)11p1111409014100Festuca pratensis plastid
39NC_019649(C)10p1104614346152Festuca ovina plastid
40NC_019628(C)17p1179709397109Pellia endiviifolia chloroplast
41NC_019616(C)10p1101513315142Vaccinium macrocarpon plastid
42NC_019601(C)10p11076347643Fragaria chiloensis chloroplast
43NC_018767(C)10p11059715980Fragaria mandshurica plastid
44NC_018766(C)11p11176237633Fragaria vesca subsp. bracteata chloroplast
45NC_018569(C)10p1104133241341Trebouxiophyceae sp. MX-AZ01 chloroplast
46NC_018569(C)10p110112552112561Trebouxiophyceae sp. MX-AZ01 chloroplast
47NC_018357(C)10p11071697178Magnolia denudata chloroplast
48NC_018113(C)10p11056125621Gossypium robinsonii chloroplast
49NC_018113(C)11p1111479114801Gossypium robinsonii chloroplast
50NC_018112(C)16p1163686336878Gossypium areysianum chloroplast
51NC_017894(C)10p110130550130559Gossypium gossypioides chloroplast
52NC_017602(C)10p1104042240431Elaeis guineensis chloroplast
53NC_017602(C)10p110112316112325Elaeis guineensis chloroplast
54NC_016986(C)10p11054455454Ginkgo biloba chloroplast
55NC_016921(C)10p1101484714856Pentactina rupicola chloroplast
56NC_016736(C)13p1134021640228Ricinus communis chloroplast
57NC_016736(C)10p1104577745786Ricinus communis chloroplast
58NC_016734(C)10p1106209462103Brassica napus chloroplast
59NC_016734(C)10p1107883278841Brassica napus chloroplast
60NC_016729(C)10p1103274832757Silene conica chloroplast
61NC_016711(C)11p1111469414704Gossypium mustelinum chloroplast
62NC_016708(C)11p1111267212682Millettia pinnata chloroplast
63NC_016690(C)12p1121472014731Gossypium tomentosum chloroplast
64NC_016677(C)11p111123710123720Leersia tisserantii plastid
65NC_016670(C)12p1121472214733Gossypium darwinii chloroplast
66NC_016668(C)11p111130709130719Gossypium raimondii chloroplast
67NC_016468(C)10p1101663316642Boea hygrometrica chloroplast
68NC_016433(C)11p1113669936709Sesamum indicum chloroplast
69NC_016433(C)10p1105190351912Sesamum indicum chloroplast
70NC_016433(C)10p1106652566534Sesamum indicum chloroplast
71NC_016430(C)12p11254575468Eleutherococcus senticosus chloroplast
72NC_016430(C)10p1106975469763Eleutherococcus senticosus chloroplast
73NC_016430(C)12p112137427137438Eleutherococcus senticosus chloroplast
74NC_016069(C)12p1125667956690Picea morrisonicola chloroplast
75NC_016064(C)10p1108427884287Pseudotsuga sinensis var. wilsoniana chloroplast
76NC_016063(C)11p1112398123991Cephalotaxus wilsoniana chloroplast DNA
77NC_016058(C)11p1119882498834Larix decidua chloroplast
78NC_015996(C)10p11054415450Pyrus pyrifolia chloroplast
79NC_015899(C)10p110158894158903Wolffia australiana chloroplast
80NC_015892(C)10p110118334118343Magnolia kwangsiensis chloroplast
81NC_015891(C)10p11054075416Spirodela polyrhiza chloroplast
82NC_015831(C)10p1104978649795Ferrocalamus rimosivaginus plastid
83NC_015610(C)10p11077957804Nelumbo nucifera chloroplast
84NC_015610(C)12p1122477424785Nelumbo nucifera chloroplast
85NC_015402(C)10p110111098111107Ptilidium pulcherrimum chloroplast
86NC_015206(C)10p11076567665Fragaria vesca subsp. vesca chloroplast
87NC_015204(C)10p1107126271271Gossypium thurberi chloroplast
88NC_015113(C)10p1107223672245Anthriscus cerefolium chloroplast
89NC_015113(C)10p110135342135351Anthriscus cerefolium chloroplast
90NC_015113(C)11p111145657145667Anthriscus cerefolium chloroplast
91NC_015084(C)11p1118368983699Coccomyxa sp. C-169 plastid
92NC_015083(C)11p1113423334243Erodium carvifolium chloroplast
93NC_015083(C)10p1104031540324Erodium carvifolium chloroplast
94NC_014699(C)11p111101874101884Equisetum arvense chloroplast
95NC_014699(C)10p110102928102937Equisetum arvense chloroplast
96NC_014697(C)10p1103381033819Prunus persica chloroplast
97NC_014697(C)11p1116063960649Prunus persica chloroplast
98NC_014697(C)10p110147658147667Prunus persica chloroplast
99NC_014676(C)10p1101467014679Theobroma cacao chloroplast
100NC_014676(C)10p110134237134246Theobroma cacao chloroplast
101NC_014674(C)12p11243924403Castanea mollissima chloroplast
102NC_014674(C)10p1101103811047Castanea mollissima chloroplast
103NC_014674(C)11p1117084170851Castanea mollissima chloroplast
104NC_014592(C)11p1114105641066Cheilanthes lindheimeri chloroplast
105NC_014592(C)16p1165850858523Cheilanthes lindheimeri chloroplast
106NC_014592(C)13p1136324863260Cheilanthes lindheimeri chloroplast
107NC_014592(C)13p1136378363795Cheilanthes lindheimeri chloroplast
108NC_014592(C)10p110130362130371Cheilanthes lindheimeri chloroplast
109NC_014592(C)13p113133201133213Cheilanthes lindheimeri chloroplast
110NC_014592(C)10p110138640138649Cheilanthes lindheimeri chloroplast
111NC_014589(C)11p11161166126Cathaya argyrophylla chloroplast
112NC_014589(C)12p1122788027891Cathaya argyrophylla chloroplast
113NC_014582(C)10p1106412964138Monsonia speciosa plastid
114NC_014582(C)10p110114713114722Monsonia speciosa plastid
115NC_014573(C)11p11195349544Geranium palmatum plastid
116NC_014569(C)10p1106331463323Erodium texanum plastid
117NC_014569(C)11p1118764187651Erodium texanum plastid
118NC_014569(C)14p1149389093903Erodium texanum plastid
119NC_014569(C)10p110106419106428Erodium texanum plastid
120NC_014348(C)10p1102224322252Pteridium aquilinum subsp. aquilinum chloroplast
121NC_014348(C)10p1104288742896Pteridium aquilinum subsp. aquilinum chloroplast
122NC_014348(C)11p1114363343643Pteridium aquilinum subsp. aquilinum chloroplast
123NC_014348(C)10p1108355183560Pteridium aquilinum subsp. aquilinum chloroplast
124NC_014346(C)10p11058865895Floydiella terrestris chloroplast
125NC_014346(C)10p110338135338144Floydiella terrestris chloroplast
126NC_012818(C)17p1176975469770 Alsophila spinulosa chloroplast
127NC_012818(C)15p115132548132562 Alsophila spinulosa chloroplast
128NC_012818(C)13p113129616129628 Alsophila spinulosa chloroplast
129NC_012818(C)13p11396809692 Alsophila spinulosa chloroplast
130NC_012101(C)12p1122190321914 Monomastix sp. OKE-1 chloroplast
131NC_011942(C)13p1136691166923 Gnetum parvifolium chloroplast
132NC_011156(C)13p1131510015112 Pinus lambertiana chloroplast
133NC_011087(C)10p110334450334459Paulinella chromatophora chromatophore
134NC_011087(C)10p110604354604363Paulinella chromatophora chromatophore
135NC_011087(C)10p110716947716956Paulinella chromatophora chromatophore
136NC_010776(C)12p112150161150172 Fagopyrum esculentum subsp. ancestrale chloroplast
137NC_010433(C)18p1186321163228 Manihot esculenta chloroplast
138NC_010433(C)13p113140995141007 Manihot esculenta chloroplast
139NC_010433(C)12p11243604371 Manihot esculenta chloroplast
140NC_010362(C)12p112117785117796 Oenothera parviflora chloroplast
141NC_010362(C)12p1121826618277 Oenothera parviflora chloroplast
142NC_010360(C)12p1121835918370 Oenothera glazioviana chloroplast
143NC_010359(C)15p1153876238776 Aneura mirabilis chloroplast
144NC_010359(C)13p1132892128933 Aneura mirabilis chloroplast
145NC_010359(C)12p1122084920860 Aneura mirabilis chloroplast
146NC_010358(C)16p1161802918044 Oenothera argillicola chloroplast
147NC_010323(C)12p112150029150040 Carica papaya chloroplast
148NC_009963(C)16p1165216452179 Cuscuta exaltata chloroplast
149NC_009962(C)13p1138486384875 Ceratophyllum demersum chloroplast
150NC_009950(C)15p1154727947293 Lolium perenne chloroplast
151NC_009618(C)14p1141756017573 Cycas taitungensis chloroplast
152NC_009600(C)14p11459085921 Illicium oligandrum chloroplast
153NC_009269(C)12p1121476314774 Barbarea verna chloroplast
154NC_009268(C)13p1136566365675 Arabis hirsuta chloroplast
155NC_009268(C)13p1136175561767 Arabis hirsuta chloroplast
156NC_009266(C)16p1167037670391 Aethionema grandiflorum chloroplast
157NC_008788(C)15p11551935207 Nuphar advena chloroplast
158NC_008602(C)13p1132144321455 Sorghum bicolor chloroplast
159NC_008457(C)17p11793149330 Piper cenocladum chloroplast
160NC_008457(C)13p11355405552 Piper cenocladum chloroplast
161NC_008326(C)14p11472197232 Liriodendron tulipifera chloroplast
162NC_008326(C)12p112118567118578 Liriodendron tulipifera chloroplast
163NC_008099(C)21p1212027020290 Oltmannsiellopsis viridis chloroplast
164NC_008099(C)15p1151547815492 Oltmannsiellopsis viridis chloroplast
165NC_007944(C)14p1141470314716 Gossypium hirsutum chloroplast
166NC_007602(C)15p1158229782311 Nicotiana tomentosiformis chloroplast
167NC_006861(C)12p1124265742668 Huperzia lucidula chloroplast
168NC_006050(C)13p1133969839710 Nymphaea alba chloroplast
169NC_006050(C)12p11255455556 Nymphaea alba chloroplast
170NC_004993(C)12p1127043570446 Calycanthus floridus var. glaucus chloroplast
171NC_004766(C)14p1149361493627 Adiantum capillus-veneris chloroplast
172NC_004766(C)14p1141364913662 Adiantum capillus-veneris chloroplast
173NC_004766(C)12p112127862127873 Adiantum capillus-veneris chloroplast
174NC_004766(C)12p112104850104861 Adiantum capillus-veneris chloroplast
175NC_004766(C)12p1126170661717 Adiantum capillus-veneris chloroplast
176NC_004766(C)12p1125138651397 Adiantum capillus-veneris chloroplast
177NC_004766(C)12p1123482434835 Adiantum capillus-veneris chloroplast