All Compound Repeats of Saccharomyces pastorianus Weihenstephan 34/70 mitochondrion
Click on Table Heading To Sort Results Accordingly
S.No. | Genome ID | SSR | SSR Type | Start | End | Tract Length | Primer Design |
---|---|---|---|---|---|---|---|
1 | NC_012145 | (C)11(G)10cgggacgccggaggagtatattaaaaagatattattgaaaagataagagaataatcttttatatg(AATTA)3(AATT)5*aataagtatttaatattttattatttat(A)10tgttaagtaattatattttatatatttatatataataagaatattagaagaaacaatatagatatatatttattattagtctatacatattaatataatc(TTATA)3 | c* | 87 | 355 | 269 | Design Primer |
2 | NC_012145 | (TTAA)6 | p4 | 782 | 805 | 24 | Design Primer |
3 | NC_012145 | (TTAT)3aagattataaactattattatattaaaacttataatataacattaagatttatatatttaatactagactcttttatttatagaa(TATAT)3tctatatattctattattatatatata(TTAT)6 | c | 1023 | 1185 | 163 | Design Primer |
4 | NC_012145 | (ATT)4 | p3 | 1676 | 1687 | 12 | Design Primer |
5 | NC_012145 | (AT)7 | p2 | 1919 | 1932 | 14 | Design Primer |
6 | NC_012145 | (TTATT)3cttattaaaacattacaataataatatacctagtttataataataactctttcaatattatatattgttataatat(TA)6 | c | 2355 | 2457 | 103 | Design Primer |
7 | NC_012145 | (AT)7tctgtatatttatactatataaatgattatattaaatataattt(TTA)4 | c | 2783 | 2852 | 70 | Design Primer |
8 | NC_012145 | (TTAAC)4 | p5 | 3208 | 3227 | 20 | Design Primer |
9 | NC_012145 | (TTAAC)4 | p5 | 3817 | 3836 | 20 | Design Primer |
10 | NC_012145 | (T)11 | p1 | 4758 | 4768 | 11 | Design Primer |
11 | NC_012145 | (TAAAG)3 | p5 | 5637 | 5651 | 15 | Design Primer |
12 | NC_012145 | (TAATA)3tactatactaggggttcggtcccgccctccatatggatatgggagggcgggtccctcactatttttataaatataattt(TA)6 | c | 5754 | 5859 | 106 | Design Primer |
13 | NC_012145 | (AAT)4 | p3 | 6149 | 6160 | 12 | Design Primer |
14 | NC_012145 | (AATAT)3 | p5 | 6638 | 6652 | 15 | Design Primer |
15 | NC_012145 | (AATA)3 | p4 | 6808 | 6819 | 12 | Design Primer |
16 | NC_012145 | (AAT)6 | p3 | 6960 | 6977 | 18 | Design Primer |
17 | NC_012145 | (ATAA)3 | p4 | 7097 | 7108 | 12 | Design Primer |
18 | NC_012145 | (ATATAC)4aaat(TATAA)3 | c | 7279 | 7321 | 43 | Design Primer |
19 | NC_012145 | (AAT)4 | p3 | 7514 | 7525 | 12 | Design Primer |
20 | NC_012145 | (AAT)4 | p3 | 7935 | 7946 | 12 | Design Primer |
21 | NC_012145 | (ATA)4ttttaaaggtatattattataagtaata(AAT)4tttat(ATA)6tgtatatata(AT)9 | c | 8367 | 8469 | 103 | Design Primer |
22 | NC_012145 | (AAT)5 | p3 | 9286 | 9300 | 15 | Design Primer |
23 | NC_012145 | (TTA)4 | p3 | 10058 | 10069 | 12 | Design Primer |
24 | NC_012145 | (TTAA)6tatattgttaatataaataatatatatcttactatttttatatataatatctttatttaactctttataatactt(TAA)4 | c | 10219 | 10329 | 111 | Design Primer |
25 | NC_012145 | (TAA)4aatactcttatcagtgttaatataatatatgtatacttttataataaataagatatgttttatataaatatatataataatatattttataatgatattt(TATAA)4 | c | 10743 | 10874 | 132 | Design Primer |
26 | NC_012145 | (ATA)4 | p3 | 11387 | 11398 | 12 | Design Primer |
27 | NC_012145 | (AATTT)3 | p5 | 11563 | 11577 | 15 | Design Primer |
28 | NC_012145 | (AT)6 | p2 | 11829 | 11840 | 12 | Design Primer |
29 | NC_012145 | (TAA)5 | p3 | 12318 | 12332 | 15 | Design Primer |
30 | NC_012145 | (C)11ggggggggcccgacttctataaatatataataaataaagaatcatagataataattaat(AATA)3 | c | 12439 | 12520 | 82 | Design Primer |
31 | NC_012145 | (AT)6 | p2 | 12658 | 12669 | 12 | Design Primer |
32 | NC_012145 | (C)10 | p1 | 12840 | 12849 | 10 | Design Primer |
33 | NC_012145 | (ATA)4 | p3 | 12974 | 12985 | 12 | Design Primer |
34 | NC_012145 | (T)11 | p1 | 13425 | 13435 | 11 | Design Primer |
35 | NC_012145 | (ATA)4(AATA)3* | c* | 13686 | 13705 | 20 | Design Primer |
36 | NC_012145 | (TTAA)3gatattaaactattaatagaattaggttactaataaattaataacaattaattttaaaacctaaaggtaaaccttatattaataata(TATAT)3 | c | 13919 | 14032 | 114 | Design Primer |
37 | NC_012145 | (AAT)5 | p3 | 15071 | 15085 | 15 | Design Primer |
38 | NC_012145 | (ATAAT)3tattatattaaacttaatagatatataattcttaagtaatatat(TA)6 | c | 15980 | 16050 | 71 | Design Primer |
39 | NC_012145 | (TTAA)4tttctatatatattatctatattagtttatattataattaattgtcatagtagataagctaggttgat(AATA)3 | c | 16732 | 16827 | 96 | Design Primer |
40 | NC_012145 | (AATTA)5 | p5 | 17161 | 17185 | 25 | Design Primer |
41 | NC_012145 | (ATATA)3 | p5 | 17378 | 17392 | 15 | Design Primer |
42 | NC_012145 | (ATAA)3ttaac(AATAT)4(ATAA)3* | c* | 18007 | 18053 | 47 | Design Primer |
43 | NC_012145 | (ATTA)5 | p4 | 18286 | 18305 | 20 | Design Primer |
44 | NC_012145 | (TCAT)4tt(ATTC)4 | c | 18493 | 18526 | 34 | Design Primer |
45 | NC_012145 | (AT)6 | p2 | 18886 | 18897 | 12 | Design Primer |
46 | NC_012145 | (TATAA)3tatcataaaatatattaaattac(AT)7aatataagtttatcataataataaatattttataaaaaattatat(ATA)5cttatacttaaaaataaataattaacaatataagactttattaatgaat(ATTA)4ataatga(AT)6 | c | 19360 | 19555 | 196 | Design Primer |
47 | NC_012145 | (ATAAT)3 | p5 | 19740 | 19754 | 15 | Design Primer |
48 | NC_012145 | (TA)7 | p2 | 20122 | 20135 | 14 | Design Primer |
49 | NC_012145 | (TAA)5 | p3 | 20352 | 20366 | 15 | Design Primer |
50 | NC_012145 | (ATAAG)5 | p5 | 20477 | 20501 | 25 | Design Primer |
51 | NC_012145 | (TAA)4 | p3 | 21192 | 21203 | 12 | Design Primer |
52 | NC_012145 | (TAATA)3 | p5 | 21342 | 21356 | 15 | Design Primer |
53 | NC_012145 | (TAATA)3caatatttaatatttattaatagagagagataatatatataatttatatataatataatgtatatttaataattt(ATA)4 | c | 21648 | 21749 | 102 | Design Primer |
54 | NC_012145 | (ATAA)3tgtaaggttcaattccttctacaagtaatataaataaatataataaatataatataaataaaataataaataatattgtt(ATAA)3 | c | 22469 | 22572 | 104 | Design Primer |
55 | NC_012145 | (ATA)4 | p3 | 22991 | 23002 | 12 | Design Primer |
56 | NC_012145 | (T)10 | p1 | 23132 | 23141 | 10 | Design Primer |
57 | NC_012145 | (TATT)3(TTA)4* | c* | 23966 | 23984 | 19 | Design Primer |
58 | NC_012145 | (TAA)4tgttattcaagaatatattgaacatcttataaatttaaataaaaaaggtgctaataaaattaattataatattgaattatataataaaattat(TAA)4 | c | 25011 | 25127 | 117 | Design Primer |
59 | NC_012145 | (TAAA)5 | p4 | 25618 | 25637 | 20 | Design Primer |
60 | NC_012145 | (AAT)5 | p3 | 26068 | 26082 | 15 | Design Primer |
61 | NC_012145 | (ATTA)6 | p4 | 26607 | 26630 | 24 | Design Primer |
62 | NC_012145 | (AAT)5 | p3 | 26820 | 26834 | 15 | Design Primer |
63 | NC_012145 | (AT)9 | p2 | 27215 | 27232 | 18 | Design Primer |
64 | NC_012145 | (AAT)4atattaataataaaaaagta(AT)6aatatataataaaataaataagattg(T)11atagggggttataatatttatg(AAT)4 | c | 27525 | 27639 | 115 | Design Primer |
65 | NC_012145 | (AATA)4 | p4 | 27805 | 27820 | 16 | Design Primer |
66 | NC_012145 | (TA)8 | p2 | 28939 | 28954 | 16 | Design Primer |
67 | NC_012145 | (TAT)4 | p3 | 29588 | 29599 | 12 | Design Primer |
68 | NC_012145 | (TAA)4ttagtttaggagtaattattaactttataacatttataaataaa(TATT)3 | c | 30607 | 30674 | 68 | Design Primer |
69 | NC_012145 | (TATAT)4aaataatactactatttaatagctttataaaataagtttatattaataatattatttattattttcttatcctttatattaattaa(ATT)4 | c | 30865 | 30982 | 118 | Design Primer |
70 | NC_012145 | (A)11tatcttc(TTTA)3 | c | 31103 | 31132 | 30 | Design Primer |
71 | NC_012145 | (C)10gcgggggcgggccggactataatatttatattttatatttaattgttaataatatataattcttattatttaattaat(AATTA)6gtgttattatattatttttatataatattaacttaactcttatttaaacttatatagtatca(AT)6cttattataatctttaataaatcataattcattattactttcctatctttaatatataattat(A)10 | c | 31361 | 31625 | 265 | Design Primer |
72 | NC_012145 | (AT)6aattcttatatctttaactttattaataaaata(AAAAT)3aa(AAAAT)3 | c | 31821 | 31897 | 77 | Design Primer |
73 | NC_012145 | (AAT)4 | p3 | 32583 | 32594 | 12 | Design Primer |
74 | NC_012145 | (AAT)4 | p3 | 33020 | 33031 | 12 | Design Primer |
75 | NC_012145 | (AAT)5 | p3 | 33277 | 33291 | 15 | Design Primer |
76 | NC_012145 | (ATAA)4 | p4 | 33474 | 33489 | 16 | Design Primer |
77 | NC_012145 | (TA)6 | p2 | 34011 | 34022 | 12 | Design Primer |
78 | NC_012145 | (TAAT)4 | p4 | 34361 | 34376 | 16 | Design Primer |
79 | NC_012145 | (AATT)3attatttattatcctttatttaattatttc(ATTAAT)3 | c | 35095 | 35154 | 60 | Design Primer |
80 | NC_012145 | (TA)6 | p2 | 35676 | 35687 | 12 | Design Primer |
81 | NC_012145 | (TAT)4 | p3 | 35882 | 35893 | 12 | Design Primer |
82 | NC_012145 | (AATA)3 | p4 | 36147 | 36158 | 12 | Design Primer |
83 | NC_012145 | (AT)13aatgataatgtattaataata(AAAT)3 | c | 36620 | 36678 | 59 | Design Primer |
84 | NC_012145 | (AATA)3tcgattgttattatacataaat(ATA)5 | c | 37121 | 37169 | 49 | Design Primer |
85 | NC_012145 | (ATTA)3 | p4 | 37638 | 37649 | 12 | Design Primer |
86 | NC_012145 | (AAAT)3tcaataag(AAT)4 | c | 38326 | 38357 | 32 | Design Primer |
87 | NC_012145 | (TTATTT)3 | p6 | 39579 | 39596 | 18 | Design Primer |
88 | NC_012145 | (ATTATA)3 | p6 | 39821 | 39838 | 18 | Design Primer |
89 | NC_012145 | (ATCA)6 | p4 | 40828 | 40851 | 24 | Design Primer |
90 | NC_012145 | (T)10 | p1 | 41097 | 41106 | 10 | Design Primer |
91 | NC_012145 | (T)11 | p1 | 41895 | 41905 | 11 | Design Primer |
92 | NC_012145 | (ATT)4atatacaatattaataaagtaattagt(ATAA)3 | c | 42575 | 42625 | 51 | Design Primer |
93 | NC_012145 | (TAAT)5aaatagactttatataa(AT)6g(TAT)5 | c | 42913 | 42977 | 65 | Design Primer |
94 | NC_012145 | (A)10 | p1 | 43079 | 43088 | 10 | Design Primer |
95 | NC_012145 | (ATT)4ataaaatattttatgaaacttta(TAAT)3 | c | 43242 | 43288 | 47 | Design Primer |
96 | NC_012145 | (C)10gcgggggcgggccggactataattatttattata(TAT)5ttattata(TAT)5(TTA)4 | c | 43398 | 43491 | 94 | Design Primer |
97 | NC_012145 | (TA)6tgatatagttagtatattaactatatttataattattggttatatattattatc(ATT)4atattattttatataagg(TTA)4 | c | 43998 | 44105 | 108 | Design Primer |
98 | NC_012145 | (ATT)4 | p3 | 44207 | 44218 | 12 | Design Primer |
99 | NC_012145 | (TTAT)3agtcccgggcctggacgggcccaattgggaccccgagaggaggtatatattatatataattcattata(TTAAT)3attattattctttaatacttttaataacttataattatacaagagaaga(AT)7ttgaagtatatatatttaattataacctaacctttaagatgttataaaatataatttattatattattatt(TTA)4 | c | 44511 | 44751 | 241 | Design Primer |
100 | NC_012145 | (TA)6 | p2 | 44966 | 44977 | 12 | Design Primer |
101 | NC_012145 | (ATATCC)5 | p6 | 45102 | 45131 | 30 | Design Primer |
102 | NC_012145 | (TTA)5tataatataatcttaatattatcctatgggacttt(ATTTA)3atataatgtattataaatcattatatttaacctataattaaatataattaataaataattatacatataatattt(TA)6 | c | 45573 | 45724 | 152 | Design Primer |
103 | NC_012145 | (ATA)4ttattaatatttaattaataatataaatttcattaataagttatttaataatataattaatga(T)14ctgaaaagagtgtatatatatattatatataaactatgatacgttttataaaaca(AT)8 | c | 46184 | 46343 | 160 | Design Primer |
104 | NC_012145 | (AT)8 | p2 | 49434 | 49449 | 16 | Design Primer |
105 | NC_012145 | (TTA)4 | p3 | 50212 | 50223 | 12 | Design Primer |
106 | NC_012145 | (TAA)5 | p3 | 50607 | 50621 | 15 | Design Primer |
107 | NC_012145 | (TA)6atataaaataattatcttatttatttttaattataaataagttttataggataaagatacagtccacagttaataaggtttgttt(ATATA)3taaaa(AT)6 | c | 51632 | 51760 | 129 | Design Primer |
108 | NC_012145 | (TATT)3aaaaataagtgtcgtgtataaaattcacaaaaataataaataataattatattattaaatattattggttattatattt(ATA)4tttatataatagctaacggggaaactct(TA)9 | c | 52134 | 52282 | 149 | Design Primer |
109 | NC_012145 | (ATATT)3tattattaatagataatatttat(A)13 | c | 52553 | 52603 | 51 | Design Primer |
110 | NC_012145 | (TATTA)7 | p5 | 53620 | 53654 | 35 | Design Primer |
111 | NC_012145 | (TA)6 | p2 | 54123 | 54134 | 12 | Design Primer |
112 | NC_012145 | (TA)6 | p2 | 54368 | 54379 | 12 | Design Primer |
113 | NC_012145 | (AT)7(ATTT)5*(TA)9* | c* | 55014 | 55062 | 49 | Design Primer |
114 | NC_012145 | (TTAT)3 | p4 | 55333 | 55344 | 12 | Design Primer |
115 | NC_012145 | (ATT)4atgttatatttatattatatatttaagatatttatataattt(TA)6 | c | 55457 | 55522 | 66 | Design Primer |
116 | NC_012145 | (TAT)4tcttatt(TTTA)3 | c | 56180 | 56210 | 31 | Design Primer |
117 | NC_012145 | (TA)8 | p2 | 56367 | 56382 | 16 | Design Primer |
118 | NC_012145 | (TAA)5 | p3 | 56642 | 56656 | 15 | Design Primer |
119 | NC_012145 | (TAT)4 | p3 | 57681 | 57692 | 12 | Design Primer |
120 | NC_012145 | (TAT)4 | p3 | 58166 | 58177 | 12 | Design Primer |
121 | NC_012145 | (TAT)4 | p3 | 59009 | 59020 | 12 | Design Primer |
122 | NC_012145 | (TA)6 | p2 | 60073 | 60084 | 12 | Design Primer |
123 | NC_012145 | (TAT)4 | p3 | 60468 | 60479 | 12 | Design Primer |
124 | NC_012145 | (T)12 | p1 | 60587 | 60598 | 12 | Design Primer |
125 | NC_012145 | (TAAT)3 | p4 | 60977 | 60988 | 12 | Design Primer |
126 | NC_012145 | (TA)6 | p2 | 61133 | 61144 | 12 | Design Primer |
127 | NC_012145 | (TAT)4 | p3 | 61528 | 61539 | 12 | Design Primer |
128 | NC_012145 | (T)12 | p1 | 61647 | 61658 | 12 | Design Primer |
129 | NC_012145 | (TAAT)3 | p4 | 62037 | 62048 | 12 | Design Primer |
130 | NC_012145 | (TA)6aatgtatatatatatgtatatattaaacttataagaatattagatttaatgttctatcttatg(TTATA)3tcttctatcttatg(TTATA)3 | c | 62195 | 62313 | 119 | Design Primer |
131 | NC_012145 | (AAATT)3 | p5 | 62698 | 62712 | 15 | Design Primer |
132 | NC_012145 | (TA)7aataagaatataatatttattataataataaataatgtata(AT)6aagaacaagtagatattcgggtccctttaataattattattctcaataataatggggaccccacccgtaaagaaactattaattatataaaaatat(ATTA)3 | c | 63019 | 63193 | 175 | Design Primer |
133 | NC_012145 | (AT)7 | p2 | 63476 | 63489 | 14 | Design Primer |
134 | NC_012145 | (AAAT)3 | p4 | 63712 | 63723 | 12 | Design Primer |
135 | NC_012145 | (TA)6 | p2 | 63953 | 63964 | 12 | Design Primer |
136 | NC_012145 | (ATA)4tataatagatataataaaaatatgtataatatatataataataatgtataataaat(ATA)4 | c | 64113 | 64192 | 80 | Design Primer |
137 | NC_012145 | (AAAT)3 | p4 | 64368 | 64379 | 12 | Design Primer |
138 | NC_012145 | (TAAAT)7 | p5 | 64825 | 64859 | 35 | Design Primer |
139 | NC_012145 | (AATTA)10 | p5 | 65221 | 65270 | 50 | Design Primer |
140 | NC_012145 | (ATA)4 | p3 | 65721 | 65732 | 12 | Design Primer |
141 | NC_012145 | (ATA)4 | p3 | 65856 | 65867 | 12 | Design Primer |
142 | NC_012145 | (ATA)4 | p3 | 66531 | 66542 | 12 | Design Primer |
143 | NC_012145 | (TAA)4 | p3 | 66781 | 66792 | 12 | Design Primer |
144 | NC_012145 | (AAT)5 | p3 | 66996 | 67010 | 15 | Design Primer |
145 | NC_012145 | (AT)6aataaatatcttatagtaatttattgtaaatg(ATAAT)4 | c | 67205 | 67268 | 64 | Design Primer |
146 | NC_012145 | (ATAAAT)3 | p6 | 67438 | 67455 | 18 | Design Primer |
147 | NC_012145 | (AATATA)3atcaataatattataattatataaacttataatatatataaataatatatacttctactttctaataataatctataaatatatataa(AT)6 | c | 67820 | 67937 | 118 | Design Primer |
148 | NC_012145 | (AATAT)4 | p5 | 68052 | 68071 | 20 | Design Primer |
149 | NC_012145 | (AATA)3 | p4 | 68204 | 68215 | 12 | Design Primer |
150 | NC_012145 | (ATT)5tatatc(ATT)7 | c | 69237 | 69278 | 42 | Design Primer |
151 | NC_012145 | (TAT)5 | p3 | 69566 | 69580 | 15 | Design Primer |
152 | NC_012145 | (TA)6atatgcatctttattatattatattcttattataatatattagatatttattgtagtttataatatattacctttatatatattaatatg(TTTA)3 | c | 69783 | 69896 | 114 | Design Primer |
153 | NC_012145 | (ATTA)3 | p4 | 70112 | 70123 | 12 | Design Primer |
154 | NC_012145 | (TTATAT)5 | p6 | 70319 | 70348 | 30 | Design Primer |
155 | NC_012145 | (TAAT)3tatatattatactatattatatata(ATTAT)3 | c | 70479 | 70530 | 52 | Design Primer |