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ChloroMitoSSRDB 2.00 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

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All Compound Repeats of Trifolium subterraneum chloroplast

Click on Table Heading To Sort Results Accordingly
S.No.Genome IDSSRSSR TypeStartEndTract LengthPrimer Design
1NC_011828(ATT)4p31821183212Design Primer
2NC_011828(AATA)3p42333234412Design Primer
3NC_011828(T)12p14118412912Design Primer
4NC_011828(TA)6p24623463412Design Primer
5NC_011828(T)13p15775578713Design Primer
6NC_011828(A)12p16105611612Design Primer
7NC_011828(AT)6p2128631287412Design Primer
8NC_011828(T)12p1144241443512Design Primer
9NC_011828(ATT)4p3150201503112Design Primer
10NC_011828(TA)6p2153871539812Design Primer
11NC_011828(A)13p1158771588913Design Primer
12NC_011828(A)13taagacatgtatttggatattccccgtccacttaacaaaataaattgcattttttatttgacataaatgaatagtggaggggaactttccg(A)12c2083520950116Design Primer
13NC_011828(AT)8aataataaaaggaggttatttatttaatttgttcgacagaaacggaactacccaa(T)12c(A)12c231472324296Design Primer
14NC_011828(TAT)4p3249682497912Design Primer
15NC_011828(ATA)5p3256452565915Design Primer
16NC_011828(TTTA)3p4283442835512Design Primer
17NC_011828(T)12p1286532866412Design Primer
18NC_011828(A)13taaagaacagaaacgaaagtccgcggaaaaaacaatatgta(T)15c289532902169Design Primer
19NC_011828(T)12p1323663237712Design Primer
20NC_011828(T)13p1342673427913Design Primer
21NC_011828(A)13tggatctattttatttgtcaaaatttttcttttctaaaaatctaaaaacgggtcaactatgaatagtaaatgtgtaaatga(ATT)4c3775837863106Design Primer
22NC_011828(TA)9p2390903910718Design Primer
23NC_011828(T)12gaaattacttcatttcttataaacttagtatctcttataaacttagtatcaaaggaaacataataggaaatagaagagaatctattctctttctctgtcg(T)12c3968939812124Design Primer
24NC_011828(ATTT)3p4419544196512Design Primer
25NC_011828(TA)10p2424424246120Design Primer
26NC_011828(TA)6p2430694308012Design Primer
27NC_011828(GATA)3p4432404325112Design Primer
28NC_011828(ATA)4(AT)6*tatatatagtatatctataa(AT)6c*452514530353Design Primer
29NC_011828(AT)6p2455364554712Design Primer
30NC_011828(TA)7p2457464575914Design Primer
31NC_011828(T)16p1465324654716Design Primer
32NC_011828(T)12p1499084991912Design Primer
33NC_011828(AT)6p2503585036912Design Primer
34NC_011828(ACTA)3p4505335054412Design Primer
35NC_011828(T)12agttttgaatatttcatttctattatttattagatttaatttatataaattatatgtatttatcccgatatcctgaatatttta(TAT)4(ATA)5c6358463706123Design Primer
36NC_011828(A)13p1664286644013Design Primer
37NC_011828(TTTA)3aattttagaatat(TA)8c843538439341Design Primer
38NC_011828(T)12p1862368624712Design Primer
39NC_011828(TCT)4p3890158902612Design Primer
40NC_011828(TAT)4p3899929000312Design Primer
41NC_011828(TAT)4p3904689047912Design Primer
42NC_011828(TAT)4p3906919070212Design Primer
43NC_011828(CTAC)3p4932769328712Design Primer
44NC_011828(AT)6acatatacaacacattg(A)13taaaaacatttg(A)13c10423610430267Design Primer
45NC_011828(A)12tattctatatat(ATAG)3c10963210966736Design Primer
46NC_011828(TATT)3p411305911307012Design Primer
47NC_011828(AT)6p211448811449912Design Primer
48NC_011828(TATT)3p411477311478412Design Primer
49NC_011828(T)12caaaattttttgctttctctccgaagaatgtatctttctcctaagactgagatcggt(A)12c11740911748981Design Primer
50NC_011828(A)13p111778611779813Design Primer
51NC_011828(T)12atttttgcattcggta(CTTT)3c12001112005040Design Primer
52NC_011828(A)13p112131512132713Design Primer
53NC_011828(A)13p112184912186113Design Primer
54NC_011828(T)12p112422712423812Design Primer
55NC_011828(T)13p112584512585713Design Primer
56NC_011828(T)12p113083213084312Design Primer
57NC_011828(T)18c(A)15c13279313282634Design Primer
58NC_011828(TAT)5(T)13*c*14216414219027Design Primer
59NC_011828(T)14p114239314240614Design Primer