All Repeats of Trifolium subterraneum chloroplast
Click on Table Heading To Sort Results Accordingly
S.No. | Genome ID | SSR | SSR Type | Start | End | Tract Length | Primer Design |
---|---|---|---|---|---|---|---|
1 | NC_011828 | (ATT)4 | p3 | 1821 | 1832 | 12 | Design Primer |
2 | NC_011828 | (AATA)3 | p4 | 2333 | 2344 | 12 | Design Primer |
3 | NC_011828 | (T)12 | p1 | 4118 | 4129 | 12 | Design Primer |
4 | NC_011828 | (TA)6 | p2 | 4623 | 4634 | 12 | Design Primer |
5 | NC_011828 | (T)13 | p1 | 5775 | 5787 | 13 | Design Primer |
6 | NC_011828 | (A)12 | p1 | 6105 | 6116 | 12 | Design Primer |
7 | NC_011828 | (AT)6 | p2 | 12863 | 12874 | 12 | Design Primer |
8 | NC_011828 | (T)12 | p1 | 14424 | 14435 | 12 | Design Primer |
9 | NC_011828 | (ATT)4 | p3 | 15020 | 15031 | 12 | Design Primer |
10 | NC_011828 | (TA)6 | p2 | 15387 | 15398 | 12 | Design Primer |
11 | NC_011828 | (A)13 | p1 | 15877 | 15889 | 13 | Design Primer |
12 | NC_011828 | (A)13taagacatgtatttggatattccccgtccacttaacaaaataaattgcattttttatttgacataaatgaatagtggaggggaactttccg(A)12 | c | 20835 | 20950 | 116 | Design Primer |
13 | NC_011828 | (AT)8aataataaaaggaggttatttatttaatttgttcgacagaaacggaactacccaa(T)12c(A)12 | c | 23147 | 23242 | 96 | Design Primer |
14 | NC_011828 | (TAT)4 | p3 | 24968 | 24979 | 12 | Design Primer |
15 | NC_011828 | (ATA)5 | p3 | 25645 | 25659 | 15 | Design Primer |
16 | NC_011828 | (TTTA)3 | p4 | 28344 | 28355 | 12 | Design Primer |
17 | NC_011828 | (T)12 | p1 | 28653 | 28664 | 12 | Design Primer |
18 | NC_011828 | (A)13taaagaacagaaacgaaagtccgcggaaaaaacaatatgta(T)15 | c | 28953 | 29021 | 69 | Design Primer |
19 | NC_011828 | (T)12 | p1 | 32366 | 32377 | 12 | Design Primer |
20 | NC_011828 | (T)13 | p1 | 34267 | 34279 | 13 | Design Primer |
21 | NC_011828 | (A)13tggatctattttatttgtcaaaatttttcttttctaaaaatctaaaaacgggtcaactatgaatagtaaatgtgtaaatga(ATT)4 | c | 37758 | 37863 | 106 | Design Primer |
22 | NC_011828 | (TA)9 | p2 | 39090 | 39107 | 18 | Design Primer |
23 | NC_011828 | (T)12gaaattacttcatttcttataaacttagtatctcttataaacttagtatcaaaggaaacataataggaaatagaagagaatctattctctttctctgtcg(T)12 | c | 39689 | 39812 | 124 | Design Primer |
24 | NC_011828 | (ATTT)3 | p4 | 41954 | 41965 | 12 | Design Primer |
25 | NC_011828 | (TA)10 | p2 | 42442 | 42461 | 20 | Design Primer |
26 | NC_011828 | (TA)6 | p2 | 43069 | 43080 | 12 | Design Primer |
27 | NC_011828 | (GATA)3 | p4 | 43240 | 43251 | 12 | Design Primer |
28 | NC_011828 | (ATA)4(AT)6*tatatatagtatatctataa(AT)6 | c* | 45251 | 45303 | 53 | Design Primer |
29 | NC_011828 | (AT)6 | p2 | 45536 | 45547 | 12 | Design Primer |
30 | NC_011828 | (TA)7 | p2 | 45746 | 45759 | 14 | Design Primer |
31 | NC_011828 | (T)16 | p1 | 46532 | 46547 | 16 | Design Primer |
32 | NC_011828 | (T)12 | p1 | 49908 | 49919 | 12 | Design Primer |
33 | NC_011828 | (AT)6 | p2 | 50358 | 50369 | 12 | Design Primer |
34 | NC_011828 | (ACTA)3 | p4 | 50533 | 50544 | 12 | Design Primer |
35 | NC_011828 | (T)12agttttgaatatttcatttctattatttattagatttaatttatataaattatatgtatttatcccgatatcctgaatatttta(TAT)4(ATA)5 | c | 63584 | 63706 | 123 | Design Primer |
36 | NC_011828 | (A)13 | p1 | 66428 | 66440 | 13 | Design Primer |
37 | NC_011828 | (TTTA)3aattttagaatat(TA)8 | c | 84353 | 84393 | 41 | Design Primer |
38 | NC_011828 | (T)12 | p1 | 86236 | 86247 | 12 | Design Primer |
39 | NC_011828 | (TCT)4 | p3 | 89015 | 89026 | 12 | Design Primer |
40 | NC_011828 | (TAT)4 | p3 | 89992 | 90003 | 12 | Design Primer |
41 | NC_011828 | (TAT)4 | p3 | 90468 | 90479 | 12 | Design Primer |
42 | NC_011828 | (TAT)4 | p3 | 90691 | 90702 | 12 | Design Primer |
43 | NC_011828 | (CTAC)3 | p4 | 93276 | 93287 | 12 | Design Primer |
44 | NC_011828 | (AT)6acatatacaacacattg(A)13taaaaacatttg(A)13 | c | 104236 | 104302 | 67 | Design Primer |
45 | NC_011828 | (A)12tattctatatat(ATAG)3 | c | 109632 | 109667 | 36 | Design Primer |
46 | NC_011828 | (TATT)3 | p4 | 113059 | 113070 | 12 | Design Primer |
47 | NC_011828 | (AT)6 | p2 | 114488 | 114499 | 12 | Design Primer |
48 | NC_011828 | (TATT)3 | p4 | 114773 | 114784 | 12 | Design Primer |
49 | NC_011828 | (T)12caaaattttttgctttctctccgaagaatgtatctttctcctaagactgagatcggt(A)12 | c | 117409 | 117489 | 81 | Design Primer |
50 | NC_011828 | (A)13 | p1 | 117786 | 117798 | 13 | Design Primer |
51 | NC_011828 | (T)12atttttgcattcggta(CTTT)3 | c | 120011 | 120050 | 40 | Design Primer |
52 | NC_011828 | (A)13 | p1 | 121315 | 121327 | 13 | Design Primer |
53 | NC_011828 | (A)13 | p1 | 121849 | 121861 | 13 | Design Primer |
54 | NC_011828 | (T)12 | p1 | 124227 | 124238 | 12 | Design Primer |
55 | NC_011828 | (T)13 | p1 | 125845 | 125857 | 13 | Design Primer |
56 | NC_011828 | (T)12 | p1 | 130832 | 130843 | 12 | Design Primer |
57 | NC_011828 | (T)18c(A)15 | c | 132793 | 132826 | 34 | Design Primer |
58 | NC_011828 | (TAT)5(T)13* | c* | 142164 | 142190 | 27 | Design Primer |
59 | NC_011828 | (T)14 | p1 | 142393 | 142406 | 14 | Design Primer |